LOCUS V041588 6751 bp DNA circular SYN 01-JAN-1980 DEFINITION synthetic circular DNA. ACCESSION V041588 VERSION V041588 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers enhancer 50..429 /note="human cytomegalovirus immediate early enhancer" /label="CMV enhancer" promoter 430..633 /note="human cytomegalovirus (CMV) immediate early promoter" /label="CMV promoter" CDS 706..1410 /label="MSRA(NM_012331)" /note="MSRA(NM_012331)" /gene="MSRA" CDS 1417..1443 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" CDS 1447..1473 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" CDS 1477..1503 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" misc_feature 1527..2115 /note="woodchuck hepatitis virus posttranscriptional regulatory element" /label="WPRE" polyA_signal 2181..2229 /note="herpes simplex virus thymidine kinase polyadenylation signal (Cole and Stacy, 1985)" /label="HSV TK poly(A) signal" rep_origin 2431..2859 /direction=RIGHT /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" /label="f1 ori" promoter 2873..3202 /note="SV40 enhancer and early promoter" /label="SV40 promoter" CDS 3269..4063 /codon_start=1 /gene="aph(3')-II (or nptII)" /note="confers resistance to neomycin, kanamycin, and G418 (Geneticin®)" /product="aminoglycoside phosphotransferase from Tn5" /transl_table=1 /translation="MIEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ GLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF*" /label="NeoR/KanR" polyA_signal 4239..4360 /note="SV40 polyadenylation signal" /label="SV40 poly(A) signal" primer_bind complement(4409..4425) /note="common sequencing primer, one of multiple similar variants" /label="M13 rev" protein_bind 4433..4449 /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG)." /label="lac operator" promoter complement(4457..4487) /note="promoter for the E. coli lac operon" /label="lac promoter" protein_bind 4502..4523 /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." /label="CAP binding site" rep_origin complement(4811..5399) /direction=LEFT /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" /label="ori" CDS complement(5570..6430) /codon_start=1 /gene="bla" /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /product="β-lactamase" /transl_table=1 /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA SLIKHW*" /label="AmpR" promoter complement(6431..6535) /gene="bla" /label="AmpR promoter" ORIGIN 1 gttaggcgtt ttgcgctgct tcgcgatgta cgggccagat atacgcgttg acattgatta 61 ttgactagtt attaatagta atcaattacg gggtcattag ttcatagccc atatatggag 121 ttccgcgtta cataacttac ggtaaatggc ccgcctggct gaccgcccaa cgacccccgc 181 ccattgacgt caataatgac gtatgttccc atagtaacgc caatagggac tttccattga 241 cgtcaatggg tggagtattt acggtaaact gcccacttgg cagtacatca agtgtatcat 301 atgccaagta cgccccctat tgacgtcaat gacggtaaat ggcccgcctg gcattatgcc 361 cagtacatga ccttatggga ctttcctact tggcagtaca tctacgtatt agtcatcgct 421 attaccatgg tgatgcggtt ttggcagtac atcaatgggc gtggatagcg gtttgactca 481 cggggatttc caagtctcca ccccattgac gtcaatggga gtttgttttg gcaccaaaat 541 caacgggact ttccaaaatg tcgtaacaac tccgccccat tgacgcaaat gggcggtagg 601 cgtgtacggt gggaggtcta tataagcaga gctctggcta gcgtttaaac ttaagcttgg 661 taccgagctc ggatccacta gtccagtgtg gtggaattcg ccaccatgct ctcggccacc 721 cggagggctt gccagctcct cctcctccac agcctctttc ccgtcccgag gatgggcaac 781 tcggcctcga acatcgtcag cccccaggag gccttgccgg gccggaagga acagacccct 841 gtagcggcca aacatcatgt caatggcaac agaacagtcg aacctttccc agagggaaca 901 cagatggctg tatttggaat gggatgtttc tggggagctg aaaggaaatt ctgggtcttg 961 aaaggagtgt attcaactca agttggtttt gcaggaggct atacttcaaa tcctacttat 1021 aaagaagtct gctcagaaaa aactggccat gcagaagtcg tccgagtggt gtaccagcca 1081 gaacacatga gttttgagga actgctcaag gtcttctggg agaatcacga cccgacccaa 1141 ggtatgcgcc aggggaacga ccatggcact cagtaccgct cggccatcta cccgacctct 1201 gccaagcaaa tggaggcagc cctgagctcc aaagagaact accaaaaggt tctttcagag 1261 cacggcttcg gccccatcac taccgacatc cgggagggac agactttcta ctatgcggaa 1321 gactaccacc agcagtacct gagcaagaac cccaatggct actgcggcct tgggggcacc 1381 ggcgtgtcct gcccagtggg tattaaaaaa ctcgagtacc catacgacgt acctgattat 1441 gcaacttatc cttatgatgt acctgattat gctagctatc cttatgatgt cccagactac 1501 gcatagtgag ggcccgatat ctcgacaatc aacctctgga ttacaaaatt tgtgaaagat 1561 tgactggtat tcttaactat gttgctcctt ttacgctatg tggatacgct gctttaatgc 1621 ctttgtatca tgctattgct tcccgtatgg ctttcatttt ctcctccttg tataaatcct 1681 ggttgctgtc tctttatgag gagttgtggc ccgttgtcag gcaacgtggc gtggtgtgca 1741 ctgtgtttgc tgacgcaacc cccactggtt ggggcattgc caccacctgt cagctccttt 1801 ccgggacttt cgctttcccc ctccctattg ccacggcgga actcatcgcc gcctgccttg 1861 cccgctgctg gacaggggct cggctgttgg gcactgacaa ttccgtggtg ttgtcgggga 1921 agctgacgtc ctttccatgg ctgctcgcct gtgttgccac ctggattctg cgcgggacgt 1981 ccttctgcta cgtcccttcg gccctcaatc cagcggacct tccttcccgc ggcctgctgc 2041 cggctctgcg gcctcttccg cgtcttcgcc ttcgccctca gacgagtcgg atctcccttt 2101 gggccgcctc cccgcctgga aacgggggag gctaactgaa acacggaagg agacaatacc 2161 ggaaggaacc cgcgctatga cggcaataaa aagacagaat aaaacgcacg ggtgttgggt 2221 cgtttgttca taaacgcggg gttcggtccc agggctggca ctctgtcgat accccaccga 2281 gaccccattg gggccaatac gcccgcgttt cttccttttc cccaccccac cccccaagtt 2341 cgggtgaagg cccagggctc gcagccaacg tcggggcggc aggccctgcc atagcagatc 2401 tgcgcagctg gggctctagg gggtatcccc acgcgccctg tagcggcgca ttaagcgcgg 2461 cgggtgtggt ggttacgcgc agcgtgaccg ctacacttgc cagcgcccta gcgcccgctc 2521 ctttcgcttt cttcccttcc tttctcgcca cgttcgccgg ctttccccgt caagctctaa 2581 atcggggcat ccctttaggg ttccgattta gtgctttacg gcacctcgac cccaaaaaac 2641 ttgattaggg tgatggttca cgtagtgggc catcgccctg atagacggtt tttcgccctt 2701 tgacgttgga gtccacgttc tttaatagtg gactcttgtt ccaaactgga acaacactca 2761 accctatctc ggtctattct tttgatttat aagggatttt ggggatttcg gcctattggt 2821 taaaaaatga gctgatttaa caaaaattta acgcgaatta attctgtgga atgtgtgtca 2881 gttagggtgt ggaaagtccc caggctcccc agcaggcaga agtatgcaaa gcatgcatct 2941 caattagtca gcaaccaggt gtggaaagtc cccaggctcc ccagcaggca gaagtatgca 3001 aagcatgcat ctcaattagt cagcaaccat agtcccgccc ctaactccgc ccatcccgcc 3061 cctaactccg cccagttccg cccattctcc gccccatggc tgactaattt tttttattta 3121 tgcagaggcc gaggccgcct ctgcctctga gctattccag aagtagtgag gaggcttttt 3181 tggaggccta ggcttttgca aaaagctccc gggagcttgt atatccattt tcggatctga 3241 tcaagagaca ggatgaggat cgtttcgcat gattgaacaa gatggattgc acgcaggttc 3301 tccggccgct tgggtggaga ggctattcgg ctatgactgg gcacaacaga caatcggctg 3361 ctctgatgcc gccgtgttcc ggctgtcagc gcaggggcgc ccggttcttt ttgtcaagac 3421 cgacctgtcc ggtgccctga atgaactgca ggacgaggca gcgcggctat cgtggctggc 3481 cacgacgggc gttccttgcg cagctgtgct cgacgttgtc actgaagcgg gaagggactg 3541 gctgctattg ggcgaagtgc cggggcagga tctcctgtca tctcaccttg ctcctgccga 3601 gaaagtatcc atcatggctg atgcaatgcg gcggctgcat acgcttgatc cggctacctg 3661 cccattcgac caccaagcga aacatcgcat cgagcgagca cgtactcgga tggaagccgg 3721 tcttgtcgat caggatgatc tggacgaaga gcatcagggg ctcgcgccag ccgaactgtt 3781 cgccaggctc aaggcgcgca tgcccgacgg cgaggatctc gtcgtgaccc atggcgatgc 3841 ctgcttgccg aatatcatgg tggaaaatgg ccgcttttct ggattcatcg actgtggccg 3901 gctgggtgtg gcggaccgct atcaggacat agcgttggct acccgtgata ttgctgaaga 3961 gcttggcggc gaatgggctg accgcttcct cgtgctttac ggtatcgccg ctcccgattc 4021 gcagcgcatc gccttctatc gccttcttga cgagttcttc tgagcgggac tctggggttc 4081 gcgaaatgac cgaccaagcg acgcccaacc tgccatcacg agatttcgat tccaccgccg 4141 ccttctatga aaggttgggc ttcggaatcg ttttccggga cgccggctgg atgatcctcc 4201 agcgcgggga tctcatgctg gagttcttcg cccaccccaa cttgtttatt gcagcttata 4261 atggttacaa ataaagcaat agcatcacaa atttcacaaa taaagcattt ttttcactgc 4321 attctagttg tggtttgtcc aaactcatca atgtatctta tcatgtctgt ataccgtcga 4381 cctctagcta gagcttggcg taatcatggt catagctgtt tcctgtgtga aattgttatc 4441 cgctcacaat tccacacaac atacgagccg gaagcataaa gtgtaaagcc tggggtgcct 4501 aatgagtgag ctaactcaca ttaattgcgt tgcgctcact gcccgctttc cagtcgggaa 4561 acctgtcgtg ccagctgcat taatgaatcg gccaacgcgc ggggagaggc ggtttgcgta 4621 ttgggcgctc ttccgcttcc tcgctcactg actcgctgcg ctcggtcgtt cggctgcggc 4681 gagcggtatc agctcactca aaggcggtaa tacggttatc cacagaatca ggggataacg 4741 caggaaagaa catgtgagca aaaggccagc aaaaggccag gaaccgtaaa aaggccgcgt 4801 tgctggcgtt tttccatagg ctccgccccc ctgacgagca tcacaaaaat cgacgctcaa 4861 gtcagaggtg gcgaaacccg acaggactat aaagatacca ggcgtttccc cctggaagct 4921 ccctcgtgcg ctctcctgtt ccgaccctgc cgcttaccgg atacctgtcc gcctttctcc 4981 cttcgggaag cgtggcgctt tctcaatgct cacgctgtag gtatctcagt tcggtgtagg 5041 tcgttcgctc caagctgggc tgtgtgcacg aaccccccgt tcagcccgac cgctgcgcct 5101 tatccggtaa ctatcgtctt gagtccaacc cggtaagaca cgacttatcg ccactggcag 5161 cagccactgg taacaggatt agcagagcga ggtatgtagg cggtgctaca gagttcttga 5221 agtggtggcc taactacggc tacactagaa ggacagtatt tggtatctgc gctctgctga 5281 agccagttac cttcggaaaa agagttggta gctcttgatc cggcaaacaa accaccgctg 5341 gtagcggtgg tttttttgtt tgcaagcagc agattacgcg cagaaaaaaa ggatctcaag 5401 aagatccttt gatcttttct acggggtctg acgctcagtg gaacgaaaac tcacgttaag 5461 ggattttggt catgagatta tcaaaaagga tcttcaccta gatcctttta aattaaaaat 5521 gaagttttaa atcaatctaa agtatatatg agtaaacttg gtctgacagt taccaatgct 5581 taatcagtga ggcacctatc tcagcgatct gtctatttcg ttcatccata gttgcctgac 5641 tccccgtcgt gtagataact acgatacggg agggcttacc atctggcccc agtgctgcaa 5701 tgataccgcg agacccacgc tcaccggctc cagatttatc agcaataaac cagccagccg 5761 gaagggccga gcgcagaagt ggtcctgcaa ctttatccgc ctccatccag tctattaatt 5821 gttgccggga agctagagta agtagttcgc cagttaatag tttgcgcaac gttgttgcca 5881 ttgctacagg catcgtggtg tcacgctcgt cgtttggtat ggcttcattc agctccggtt 5941 cccaacgatc aaggcgagtt acatgatccc ccatgttgtg caaaaaagcg gttagctcct 6001 tcggtcctcc gatcgttgtc agaagtaagt tggccgcagt gttatcactc atggttatgg 6061 cagcactgca taattctctt actgtcatgc catccgtaag atgcttttct gtgactggtg 6121 agtactcaac caagtcattc tgagaatagt gtatgcggcg accgagttgc tcttgcccgg 6181 cgtcaatacg ggataatacc gcgccacata gcagaacttt aaaagtgctc atcattggaa 6241 aacgttcttc ggggcgaaaa ctctcaagga tcttaccgct gttgagatcc agttcgatgt 6301 aacccactcg tgcacccaac tgatcttcag catcttttac tttcaccagc gtttctgggt 6361 gagcaaaaac aggaaggcaa aatgccgcaa aaaagggaat aagggcgaca cggaaatgtt 6421 gaatactcat actcttcctt tttcaatatt attgaagcat ttatcagggt tattgtctca 6481 tgagcggata catatttgaa tgtatttaga aaaataaaca aataggggtt ccgcgcacat 6541 ttccccgaaa agtgccacct gacgtcgacg gatcgggaga tctcccgatc ccctatggtc 6601 gactctcagt acaatctgct ctgatgccgc atagttaagc cagtatctgc tccctgcttg 6661 tgtgttggag gtcgctgagt agtgcgcgag caaaatttaa gctacaacaa ggcaaggctt 6721 gaccgacaat tgcatgaaga atctgcttag g //