LOCUS V039308 8348 bp DNA circular SYN 01-JAN-1980 DEFINITION synthetic circular DNA. ACCESSION V039308 VERSION V039308 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers LTR 234..414 /note="truncated 5' long terminal repeat (LTR) from HIV-1" /label="5' LTR (truncated)" misc_feature 458..583 /note="packaging signal of human immunodeficiency virus type 1" /label="HIV-1 Ψ" misc_feature 1076..1309 /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." /label="RRE" CDS 1493..1537 /codon_start=1 /note="recognized by the 2H10 single-chain llama nanobody" /product="antigenic peptide corresponding to amino acids 655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik et al., 2013)" /transl_table=1 /translation="KNEQELLELDKWASL" /label="gp41 peptide" misc_feature 1804..1920 /note="central polypurine tract and central termination sequence of HIV-1" /label="cPPT/CTS" promoter 2010..2213 /note="human cytomegalovirus (CMV) immediate early promoter" /label="CMV promoter" CDS 2305..2331 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" CDS 2335..2361 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" CDS 2365..2391 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" CDS 2398..3267 /label="ECHS1(NM_004092)" /note="ECHS1(NM_004092)" /gene="ECHS1" promoter 3318..3529 /note="core promoter for human elongation factor EF-1α" /label="EF-1α core promoter" LTR 3542..3810 /note="truncated 5' long terminal repeat (LTR) from human T-cell leukemia virus (HTLV) type 1" /label="5' LTR (truncated)" CDS 3837..4436 /codon_start=1 /gene="pac from Streptomyces alboniger" /note="confers resistance to puromycin" /product="puromycin N-acetyltransferase" /transl_table=1 /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA*" /label="PuroR" misc_feature 4443..5031 /note="woodchuck hepatitis virus posttranscriptional regulatory element" /label="WPRE" LTR 5105..5338 /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" /label="3' LTR (ΔU3)" polyA_signal 5410..5531 /note="SV40 polyadenylation signal" /label="SV40 poly(A) signal" rep_origin 5550..5685 /note="SV40 origin of replication" /label="SV40 ori" primer_bind complement(5723..5739) /note="common sequencing primer, one of multiple similar variants" /label="M13 rev" protein_bind 5747..5763 /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG)." /label="lac operator" promoter complement(5771..5801) /note="promoter for the E. coli lac operon" /label="lac promoter" protein_bind 5816..5837 /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." /label="CAP binding site" rep_origin complement(6125..6713) /direction=LEFT /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" /label="ori" CDS complement(6884..7744) /codon_start=1 /gene="bla" /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /product="β-lactamase" /transl_table=1 /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA SLIKHW*" /label="AmpR" promoter complement(7745..7849) /gene="bla" /label="AmpR promoter" primer_bind 8323..8339 /note="common sequencing primer, one of multiple similar variants" /label="M13 fwd" ORIGIN 1 acgcgtgtag tcttatgcaa tactcttgta gtcttgcaac atggtaacga tgagttagca 61 acatgcctta caaggagaga aaaagcaccg tgcatgccga ttggtggaag taaggtggta 121 cgatcgtgcc ttattaggaa ggcaacagac gggtctgaca tggattggac gaaccactga 181 attgccgcat tgcagagata ttgtatttaa gtgcctagct cgatacaata aacgggtctc 241 tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta 301 agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact 361 ctggtaacta gagatccctc agaccctttt agtcagtgtg gaaaatctct agcagtggcg 421 cccgaacagg gacctgaaag cgaaagggaa accagagctc tctcgacgca ggactcggct 481 tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt 541 gactagcgga ggctagaagg agagagatgg gtgcgagagc gtcagtatta agcgggggag 601 aattagatcg cgatgggaaa aaattcggtt aaggccaggg ggaaagaaaa aatataaatt 661 aaaacatata gtatgggcaa gcagggagct agaacgattc gcagttaatc ctggcctgtt 721 agaaacatca gaaggctgta gacaaatact gggacagcta caaccatccc ttcagacagg 781 atcagaagaa cttagatcat tatataatac agtagcaacc ctctattgtg tgcatcaaag 841 gatagagata aaagacacca aggaagcttt agacaagata gaggaagagc aaaacaaaag 901 taagaccacc gcacagcaag cggccactga tcttcagacc tggaggagga gatatgaggg 961 acaattggag aagtgaatta tataaatata aagtagtaaa aattgaacca ttaggagtag 1021 cacccaccaa ggcaaagaga agagtggtgc agagagaaaa aagagcagtg ggaataggag 1081 ctttgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagcc tcaatgacgc 1141 tgacggtaca ggccagacaa ttattgtctg gtatagtgca gcagcagaac aatttgctga 1201 gggctattga ggcgcaacag catctgttgc aactcacagt ctggggcatc aagcagctcc 1261 aggcaagaat cctggctgtg gaaagatacc taaaggatca acagctcctg gggatttggg 1321 gttgctctgg aaaactcatt tgcaccactg ctgtgccttg gaatgctagt tggagtaata 1381 aatctctgga acagattgga atcacacgac ctggatggag tgggacagag aaattaacaa 1441 ttacacaagc ttaatacact ccttaattga agaatcgcaa aaccagcaag aaaagaatga 1501 acaagaatta ttggaattag ataaatgggc aagtttgtgg aattggttta acataacaaa 1561 ttggctgtgg tatataaaat tattcataat gatagtagga ggcttggtag gtttaagaat 1621 agtttttgct gtactttcta tagtgaatag agttaggcag ggatattcac cattatcgtt 1681 tcagacccac ctcccaaccc cgaggggacc cgacaggccc gaaggaatag aagaagaagg 1741 tggagagaga gacagagaca gatccattcg attagtgaac ggatctcgac ggtatcggtt 1801 aacttttaaa agaaaagggg ggattggggg gtacagtgca ggggaaagaa tagtagacat 1861 aatagcaaca gacatacaaa ctaaagaatt acaaaaacaa attacaaaat tcaaaatttt 1921 atcgatacta gtattatgcc cagtacatga ccttatggga ctttcctact tggcagtaca 1981 tctacgtatt agtcatcgct attaccatgg tgatgcggtt ttggcagtac atcaatgggc 2041 gtggatagcg gtttgactca cggggatttc caagtctcca ccccattgac gtcaatggga 2101 gtttgttttg gcaccaaaat caacgggact ttccaaaatg tcgtaacaac tccgccccat 2161 tgacgcaaat gggcggtagg cgtgtacggt gggaggttta tataagcaga gctcgtttag 2221 tgaaccgtca gatcgcctgg agacgccatc cacgctgttt tgacctccat agaagattct 2281 agagctagcg aattcgccac catgtaccca tacgacgtac ctgattatgc aacttatcct 2341 tatgatgtac ctgattatgc tagctatcct tatgatgtcc cagactacgc actcgagatg 2401 gccgccctgc gtgtcctgct gtcctgcgtc cgcggcccgc tgaggccccc ggttcgctgt 2461 cccgcctggc gtcccttcgc ctcgggtgct aactttgagt acatcatcgc agaaaaaaga 2521 gggaagaata acaccgtggg gttgatccaa ctgaaccgcc ccaaggccct caatgcactt 2581 tgcgatggcc tgattgacga gctcaaccag gccctgaaga ccttcgagga ggacccggcc 2641 gtgggggcca ttgtcctcac cggcggggat aaggcctttg cagctggagc tgatatcaag 2701 gaaatgcaga acctgagttt ccaggactgt tactccagca agttcttgaa gcactgggac 2761 cacctcaccc aggtcaagaa gccagtcatc gctgctgtca atggctatgc ctttggcggg 2821 ggctgtgagc ttgccatgat gtgtgatatc atctatgccg gtgagaaggc ccagtttgca 2881 cagccggaga tcttaatagg aaccatccca ggtgcgggcg gcacccagag actcacccgt 2941 gctgttggga agtcgctggc gatggagatg gtcctcactg gtgaccggat ctcagcccag 3001 gacgccaagc aagcaggtct tgtcagcaag atttgtcctg ttgagacact ggtggaagaa 3061 gccatccagt gtgcagaaaa aattgccagc aattctaaaa ttgtagtagc gatggccaaa 3121 gaatcagtga atgcagcttt tgaaatgaca ttaacagaag gaagtaagtt ggagaagaaa 3181 ctcttttatt caacctttgc cactgatgac cggaaagaag ggatgaccgc gtttgtggaa 3241 aagagaaagg ccaacttcaa agaccagtga ggatccgcgg ccgcgaagga tctgcgatcg 3301 ctccggtgcc cgtcagtggg cagagcgcac atcgcccaca gtccccgaga agttgggggg 3361 aggggtcggc aattgaacgg gtgcctagag aaggtggcgc ggggtaaact gggaaagtga 3421 tgtcgtgtac tggctccgcc tttttcccga gggtggggga gaaccgtata taagtgcagt 3481 agtcgccgtg aacgttcttt ttcgcaacgg gtttgccgcc agaacacagc tgaagcttcg 3541 aggggctcgc atctctcctt cacgcgcccg ccgccctacc tgaggccgcc atccacgccg 3601 gttgagtcgc gttctgccgc ctcccgcctg tggtgcctcc tgaactgcgt ccgccgtcta 3661 ggtaagttta aagctcaggt cgagaccggg cctttgtccg gcgctccctt ggagcctacc 3721 tagactcagc cggctctcca cgctttgcct gaccctgctt gctcaactct acgtctttgt 3781 ttcgttttct gttctgcgcc gttacagatc caagctgtga ccggcgccta cgctagatga 3841 ccgagtacaa gcccacggtg cgcctcgcca cccgcgacga cgtcccccgg gccgtacgca 3901 ccctcgccgc cgcgttcgcc gactaccccg ccacgcgcca caccgtcgac ccggaccgcc 3961 acatcgagcg ggtcaccgag ctgcaagaac tcttcctcac gcgcgtcggg ctcgacatcg 4021 gcaaggtgtg ggtcgcggac gacggcgccg cggtggcggt ctggaccacg ccggagagcg 4081 tcgaagcggg ggcggtgttc gccgagatcg gcccgcgcat ggccgagttg agcggttccc 4141 ggctggccgc gcagcaacag atggaaggcc tcctggcgcc gcaccggccc aaggagcccg 4201 cgtggttcct ggccaccgtc ggcgtctcgc ccgaccacca gggcaagggt ctgggcagcg 4261 ccgtcgtgct ccccggagtg gaggcggccg agcgcgccgg ggtgcccgcc ttcctggaga 4321 cctccgcgcc ccgcaacctc cccttctacg agcggctcgg cttcaccgtc accgccgacg 4381 tcgaggtgcc cgaaggaccg cgcacctggt gcatgacccg caagcccggt gcctgagtcg 4441 acaatcaacc tctggattac aaaatttgtg aaagattgac tggtattctt aactatgttg 4501 ctccttttac gctatgtgga tacgctgctt taatgccttt gtatcatgct attgcttccc 4561 gtatggcttt cattttctcc tccttgtata aatcctggtt gctgtctctt tatgaggagt 4621 tgtggcccgt tgtcaggcaa cgtggcgtgg tgtgcactgt gtttgctgac gcaaccccca 4681 ctggttgggg cattgccacc acctgtcagc tcctttccgg gactttcgct ttccccctcc 4741 ctattgccac ggcggaactc atcgccgcct gccttgcccg ctgctggaca ggggctcggc 4801 tgttgggcac tgacaattcc gtggtgttgt cggggaaatc atcgtccttt ccttggctgc 4861 tcgcctgtgt tgccacctgg attctgcgcg ggacgtcctt ctgctacgtc ccttcggccc 4921 tcaatccagc ggaccttcct tcccgcggcc tgctgccggc tctgcggcct cttccgcgtc 4981 ttcgccttcg ccctcagacg agtcggatct ccctttgggc cgcctccccg cctggtacct 5041 ttaagaccaa tgacttacaa ggcagctgta gatcttagcc actttttaaa agaaaagggg 5101 ggactggaag ggctaattca ctcccaacga aaataagatc tgctttttgc ttgtactggg 5161 tctctctggt tagaccagat ctgagcctgg gagctctctg gctaactagg gaacccactg 5221 cttaagcctc aataaagctt gccttgagtg cttcaagtag tgtgtgcccg tctgttgtgt 5281 gactctggta actagagatc cctcagaccc ttttagtcag tgtggaaaat ctctagcagt 5341 agtagttcat gtcatcttat tattcagtat ttataacttg caaagaaatg aatatcagag 5401 agtgagagga acttgtttat tgcagcttat aatggttaca aataaagcaa tagcatcaca 5461 aatttcacaa ataaagcatt tttttcactg cattctagtt gtggtttgtc caaactcatc 5521 aatgtatctt atcatgtctg gctctagcta tcccgcccct aactccgccc agttccgccc 5581 attctccgcc ccatggctga ctaatttttt ttatttatgc agaggccgag gccgcctcgg 5641 cctctgagct attccagaag tagtgaggag gcttttttgg aggcctagac ttttgcagag 5701 acggcccaaa ttcgtaatca tggtcatagc tgtttcctgt gtgaaattgt tatccgctca 5761 caattccaca caacatacga gccggaagca taaagtgtaa agcctggggt gcctaatgag 5821 tgagctaact cacattaatt gcgttgcgct cactgcccgc tttccagtcg ggaaacctgt 5881 cgtgccagct gcattaatga atcggccaac gcgcggggag aggcggtttg cgtattgggc 5941 gctcttccgc ttcctcgctc actgactcgc tgcgctcggt cgttcggctg cggcgagcgg 6001 tatcagctca ctcaaaggcg gtaatacggt tatccacaga atcaggggat aacgcaggaa 6061 agaacatgtg agcaaaaggc cagcaaaagg ccaggaaccg taaaaaggcc gcgttgctgg 6121 cgtttttcca taggctccgc ccccctgacg agcatcacaa aaatcgacgc tcaagtcaga 6181 ggtggcgaaa cccgacagga ctataaagat accaggcgtt tccccctgga agctccctcg 6241 tgcgctctcc tgttccgacc ctgccgctta ccggatacct gtccgccttt ctcccttcgg 6301 gaagcgtggc gctttctcat agctcacgct gtaggtatct cagttcggtg taggtcgttc 6361 gctccaagct gggctgtgtg cacgaacccc ccgttcagcc cgaccgctgc gccttatccg 6421 gtaactatcg tcttgagtcc aacccggtaa gacacgactt atcgccactg gcagcagcca 6481 ctggtaacag gattagcaga gcgaggtatg taggcggtgc tacagagttc ttgaagtggt 6541 ggcctaacta cggctacact agaaggacag tatttggtat ctgcgctctg ctgaagccag 6601 ttaccttcgg aaaaagagtt ggtagctctt gatccggcaa acaaaccacc gctggtagcg 6661 gtggtttttt tgtttgcaag cagcagatta cgcgcagaaa aaaaggatct caagaagatc 6721 ctttgatctt ttctacgggg tctgacgctc agtggaacga aaactcacgt taagggattt 6781 tggtcatgag attatcaaaa aggatcttca cctagatcct tttaaattaa aaatgaagtt 6841 ttaaatcaat ctaaagtata tatgagtaaa cttggtctga cagttaccaa tgcttaatca 6901 gtgaggcacc tatctcagcg atctgtctat ttcgttcatc catagttgcc tgactccccg 6961 tcgtgtagat aactacgata cgggagggct taccatctgg ccccagtgct gcaatgatac 7021 cgcgagaccc acgctcaccg gctccagatt tatcagcaat aaaccagcca gccggaaggg 7081 ccgagcgcag aagtggtcct gcaactttat ccgcctccat ccagtctatt aattgttgcc 7141 gggaagctag agtaagtagt tcgccagtta atagtttgcg caacgttgtt gccattgcta 7201 caggcatcgt ggtgtcacgc tcgtcgtttg gtatggcttc attcagctcc ggttcccaac 7261 gatcaaggcg agttacatga tcccccatgt tgtgcaaaaa agcggttagc tccttcggtc 7321 ctccgatcgt tgtcagaagt aagttggccg cagtgttatc actcatggtt atggcagcac 7381 tgcataattc tcttactgtc atgccatccg taagatgctt ttctgtgact ggtgagtact 7441 caaccaagtc attctgagaa tagtgtatgc ggcgaccgag ttgctcttgc ccggcgtcaa 7501 tacgggataa taccgcgcca catagcagaa ctttaaaagt gctcatcatt ggaaaacgtt 7561 cttcggggcg aaaactctca aggatcttac cgctgttgag atccagttcg atgtaaccca 7621 ctcgtgcacc caactgatct tcagcatctt ttactttcac cagcgtttct gggtgagcaa 7681 aaacaggaag gcaaaatgcc gcaaaaaagg gaataagggc gacacggaaa tgttgaatac 7741 tcatactctt cctttttcaa tattattgaa gcatttatca gggttattgt ctcatgagcg 7801 gatacatatt tgaatgtatt tagaaaaata aacaaatagg ggttccgcgc acatttcccc 7861 gaaaagtgcc acctgacgtc taagaaacca ttattatcat gacattaacc tataaaaata 7921 ggcgtatcac gaggcccttt cgtctcgcgc gtttcggtga tgacggtgaa aacctctgac 7981 acatgcagct cccggagacg gtcacagctt gtctgtaagc ggatgccggg agcagacaag 8041 cccgtcaggg cgcgtcagcg ggtgttggcg ggtgtcgggg ctggcttaac tatgcggcat 8101 cagagcagat tgtactgaga gtgcaccata tgcggtgtga aataccgcac agatgcgtaa 8161 ggagaaaata ccgcatcagg cgccattcgc cattcaggct gcgcaactgt tgggaagggc 8221 gatcggtgcg ggcctcttcg ctattacgcc agctggcgaa agggggatgt gctgcaaggc 8281 gattaagttg ggtaacgcca gggttttccc agtcacgacg ttgtaaaacg acggccagtg 8341 ccaagctg //