LOCUS V041410 9005 bp DNA circular SYN 01-JAN-1980 DEFINITION synthetic circular DNA. ACCESSION V041410 VERSION V041410 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers LTR 234..414 /note="truncated 5' long terminal repeat (LTR) from HIV-1" /label="5' LTR (truncated)" misc_feature 458..583 /note="packaging signal of human immunodeficiency virus type 1" /label="HIV-1 Ψ" misc_feature 1076..1309 /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." /label="RRE" CDS 1493..1537 /codon_start=1 /note="recognized by the 2H10 single-chain llama nanobody" /product="antigenic peptide corresponding to amino acids 655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik et al., 2013)" /transl_table=1 /translation="KNEQELLELDKWASL" /label="gp41 peptide" misc_feature 1804..1920 /note="central polypurine tract and central termination sequence of HIV-1" /label="cPPT/CTS" promoter 2010..2213 /note="human cytomegalovirus (CMV) immediate early promoter" /label="CMV promoter" CDS 2302..3636 /label="Nr1h3(NM_013839)" /note="Nr1h3(NM_013839)" /gene="Nr1h3" CDS 3637..3663 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" CDS 3667..3693 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" CDS 3697..3723 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /transl_table=1 /translation="YPYDVPDYA" /label="HA" promoter 3774..3985 /note="core promoter for human elongation factor EF-1α" /label="EF-1α core promoter" LTR 3998..4266 /note="truncated 5' long terminal repeat (LTR) from human T-cell leukemia virus (HTLV) type 1" /label="5' LTR (truncated)" CDS 4299..5093 /codon_start=1 /gene="aph(3')-II (or nptII)" /note="confers resistance to neomycin, kanamycin, and G418 (Geneticin®)" /product="aminoglycoside phosphotransferase from Tn5" /transl_table=1 /translation="MAEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ GLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF*" /label="NeoR/KanR" misc_feature 5100..5688 /note="woodchuck hepatitis virus posttranscriptional regulatory element" /label="WPRE" LTR 5762..5995 /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" /label="3' LTR (ΔU3)" polyA_signal 6067..6188 /note="SV40 polyadenylation signal" /label="SV40 poly(A) signal" rep_origin 6207..6342 /note="SV40 origin of replication" /label="SV40 ori" primer_bind complement(6380..6396) /note="common sequencing primer, one of multiple similar variants" /label="M13 rev" protein_bind 6404..6420 /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG)." /label="lac operator" promoter complement(6428..6458) /note="promoter for the E. coli lac operon" /label="lac promoter" protein_bind 6473..6494 /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." /label="CAP binding site" rep_origin complement(6782..7370) /direction=LEFT /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" /label="ori" CDS complement(7541..8401) /codon_start=1 /gene="bla" /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /product="β-lactamase" /transl_table=1 /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA SLIKHW*" /label="AmpR" promoter complement(8402..8506) /gene="bla" /label="AmpR promoter" primer_bind 8980..8996 /note="common sequencing primer, one of multiple similar variants" /label="M13 fwd" ORIGIN 1 acgcgtgtag tcttatgcaa tactcttgta gtcttgcaac atggtaacga tgagttagca 61 acatgcctta caaggagaga aaaagcaccg tgcatgccga ttggtggaag taaggtggta 121 cgatcgtgcc ttattaggaa ggcaacagac gggtctgaca tggattggac gaaccactga 181 attgccgcat tgcagagata ttgtatttaa gtgcctagct cgatacaata aacgggtctc 241 tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta 301 agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact 361 ctggtaacta gagatccctc agaccctttt agtcagtgtg gaaaatctct agcagtggcg 421 cccgaacagg gacctgaaag cgaaagggaa accagagctc tctcgacgca ggactcggct 481 tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt 541 gactagcgga ggctagaagg agagagatgg gtgcgagagc gtcagtatta agcgggggag 601 aattagatcg cgatgggaaa aaattcggtt aaggccaggg ggaaagaaaa aatataaatt 661 aaaacatata gtatgggcaa gcagggagct agaacgattc gcagttaatc ctggcctgtt 721 agaaacatca gaaggctgta gacaaatact gggacagcta caaccatccc ttcagacagg 781 atcagaagaa cttagatcat tatataatac agtagcaacc ctctattgtg tgcatcaaag 841 gatagagata aaagacacca aggaagcttt agacaagata gaggaagagc aaaacaaaag 901 taagaccacc gcacagcaag cggccactga tcttcagacc tggaggagga gatatgaggg 961 acaattggag aagtgaatta tataaatata aagtagtaaa aattgaacca ttaggagtag 1021 cacccaccaa ggcaaagaga agagtggtgc agagagaaaa aagagcagtg ggaataggag 1081 ctttgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagcc tcaatgacgc 1141 tgacggtaca ggccagacaa ttattgtctg gtatagtgca gcagcagaac aatttgctga 1201 gggctattga ggcgcaacag catctgttgc aactcacagt ctggggcatc aagcagctcc 1261 aggcaagaat cctggctgtg gaaagatacc taaaggatca acagctcctg gggatttggg 1321 gttgctctgg aaaactcatt tgcaccactg ctgtgccttg gaatgctagt tggagtaata 1381 aatctctgga acagattgga atcacacgac ctggatggag tgggacagag aaattaacaa 1441 ttacacaagc ttaatacact ccttaattga agaatcgcaa aaccagcaag aaaagaatga 1501 acaagaatta ttggaattag ataaatgggc aagtttgtgg aattggttta acataacaaa 1561 ttggctgtgg tatataaaat tattcataat gatagtagga ggcttggtag gtttaagaat 1621 agtttttgct gtactttcta tagtgaatag agttaggcag ggatattcac cattatcgtt 1681 tcagacccac ctcccaaccc cgaggggacc cgacaggccc gaaggaatag aagaagaagg 1741 tggagagaga gacagagaca gatccattcg attagtgaac ggatctcgac ggtatcggtt 1801 aacttttaaa agaaaagggg ggattggggg gtacagtgca ggggaaagaa tagtagacat 1861 aatagcaaca gacatacaaa ctaaagaatt acaaaaacaa attacaaaat tcaaaatttt 1921 atcgatacta gtattatgcc cagtacatga ccttatggga ctttcctact tggcagtaca 1981 tctacgtatt agtcatcgct attaccatgg tgatgcggtt ttggcagtac atcaatgggc 2041 gtggatagcg gtttgactca cggggatttc caagtctcca ccccattgac gtcaatggga 2101 gtttgttttg gcaccaaaat caacgggact ttccaaaatg tcgtaacaac tccgccccat 2161 tgacgcaaat gggcggtagg cgtgtacggt gggaggttta tataagcaga gctcgtttag 2221 tgaaccgtca gatcgcctgg agacgccatc cacgctgttt tgacctccat agaagattct 2281 agagctagcg aattcgccac catgtccttg tggctggagg cctcaatgcc tgatgtttct 2341 cctgattctg caacggagtt gtggaagaca gaacctcaag atgcaggaga ccagggaggc 2401 aacacttgca tcctcaggga ggaagccagg atgccccagt caactggggt tgctttaggg 2461 atagggttgg agtcagcaga gcctacagcc ctgctcccca gggcagagac cctcccagag 2521 ccgacagagc ttcgtccaca aaagcggaaa aagggcccag cccccaaaat gctggggaac 2581 gagctgtgca gtgtctgtgg ggacaaagcc tctggcttcc attacaacgt gctgagctgc 2641 gagggctgca agggattctt ccgccgcagt gtcatcaagg gagcacgcta tgtctgccac 2701 agcggtggcc actgccccat ggacacctac atgcggcgga aatgccagga gtgtcgactt 2761 cgcaaatgcc gccaggcagg catgagggag gagtgtgtgc tgtcagaaga acagatccgc 2821 ttgaagaaac tgaagcggca agaagaggaa caggctcaag ccacttcggt gtccccaagg 2881 gtgtcctcac ctcctcaagt cctgccacag ctcagcccag agcagctggg catgatcgag 2941 aagctggtgg ctgcccagca acagtgtaac aggcgctcct tctcagaccg cctgcgcgtc 3001 acgccttggc ccattgcacc cgaccctcag agccgggaag cccgacaaca gcgctttgcc 3061 cactttactg agctggccat cgtgtccgtg caggagattg ttgactttgc caaacagctc 3121 cctggcttcc tacagctcag cagggaggac cagatcgcct tgctgaagac ctctgcaatc 3181 gaggtcatgc ttctggagac gtcacggagg tacaaccccg gcagtgagag catcaccttc 3241 ctcaaggact tcagttacaa ccgggaagac tttgccaaag cagggctgca ggtggagttc 3301 atcaacccca tctttgagtt ctccagagcc atgaatgagc tgcaactcaa tgatgctgag 3361 tttgctctgc tcattgccat cagcatcttc tctgcagacc ggcccaacgt gcaggaccag 3421 ctccaagtag agaggctgca acacacatat gtggaggccc tgcacgccta cgtctccatc 3481 aaccaccccc acgacccact gatgttccca cggatgctaa tgaagctggt gagcctccgt 3541 actttgagca gcgtccattc agagcaagtg tttgcccttc gcctgcagga caaaaagctt 3601 ccccctctgc tgtctgagat ctgggatgtc cacgagtacc catacgacgt acctgattat 3661 gcaacttatc cttatgatgt acctgattat gctagctatc cttatgatgt cccagactac 3721 gcatagggat ccgcggccgc gaaggatctg cgatcgctcc ggtgcccgtc agtgggcaga 3781 gcgcacatcg cccacagtcc ccgagaagtt ggggggaggg gtcggcaatt gaacgggtgc 3841 ctagagaagg tggcgcgggg taaactggga aagtgatgtc gtgtactggc tccgcctttt 3901 tcccgagggt gggggagaac cgtatataag tgcagtagtc gccgtgaacg ttctttttcg 3961 caacgggttt gccgccagaa cacagctgaa gcttcgaggg gctcgcatct ctccttcacg 4021 cgcccgccgc cctacctgag gccgccatcc acgccggttg agtcgcgttc tgccgcctcc 4081 cgcctgtggt gcctcctgaa ctgcgtccgc cgtctaggta agtttaaagc tcaggtcgag 4141 accgggcctt tgtccggcgc tcccttggag cctacctaga ctcagccggc tctccacgct 4201 ttgcctgacc ctgcttgctc aactctacgt ctttgtttcg ttttctgttc tgcgccgtta 4261 cagatccaag ctgtgaccgg cgcctacgct aggccaccat ggctgaacaa gatggattgc 4321 acgcaggttc tccggccgct tgggtggaga ggctattcgg ctatgactgg gcacaacaga 4381 caatcggctg ctctgatgcc gccgtgttcc ggctgtcagc gcaggggcgc ccggttcttt 4441 ttgtcaagac cgacctgtcc ggtgccctga atgaactgca ggacgaggca gcgcggctat 4501 cgtggctggc cacgacgggc gttccttgcg cagctgtgct cgacgttgtc actgaagcgg 4561 gaagggactg gctgctattg ggcgaagtgc cggggcagga tctcctgtca tctcaccttg 4621 ctcctgccga gaaagtatcc atcatggctg atgcaatgcg gcggctgcat acgcttgatc 4681 cggctacctg cccattcgac caccaagcga aacatcgcat cgagcgagca cgtactcgga 4741 tggaagccgg tcttgtcgat caggatgatc tggacgaaga gcatcagggg ctcgcgccag 4801 ccgaactgtt cgccaggctc aaggcgcgca tgcccgacgg cgaggatctc gtcgtgaccc 4861 atggcgatgc ctgcttgccg aatatcatgg tggaaaatgg ccgcttttct ggattcatcg 4921 actgtggccg gctgggtgtg gcggaccgct atcaggacat agcgttggct acccgtgata 4981 ttgctgaaga gcttggcggc gaatgggctg accgcttcct cgtgctttac ggtatcgccg 5041 ctcccgattc gcagcgcatc gccttctatc gccttcttga cgagttcttc tgagtcgaca 5101 atcaacctct ggattacaaa atttgtgaaa gattgactgg tattcttaac tatgttgctc 5161 cttttacgct atgtggatac gctgctttaa tgcctttgta tcatgctatt gcttcccgta 5221 tggctttcat tttctcctcc ttgtataaat cctggttgct gtctctttat gaggagttgt 5281 ggcccgttgt caggcaacgt ggcgtggtgt gcactgtgtt tgctgacgca acccccactg 5341 gttggggcat tgccaccacc tgtcagctcc tttccgggac tttcgctttc cccctcccta 5401 ttgccacggc ggaactcatc gccgcctgcc ttgcccgctg ctggacaggg gctcggctgt 5461 tgggcactga caattccgtg gtgttgtcgg ggaaatcatc gtcctttcct tggctgctcg 5521 cctgtgttgc cacctggatt ctgcgcggga cgtccttctg ctacgtccct tcggccctca 5581 atccagcgga ccttccttcc cgcggcctgc tgccggctct gcggcctctt ccgcgtcttc 5641 gccttcgccc tcagacgagt cggatctccc tttgggccgc ctccccgcct ggtaccttta 5701 agaccaatga cttacaaggc agctgtagat cttagccact ttttaaaaga aaagggggga 5761 ctggaagggc taattcactc ccaacgaaaa taagatctgc tttttgcttg tactgggtct 5821 ctctggttag accagatctg agcctgggag ctctctggct aactagggaa cccactgctt 5881 aagcctcaat aaagcttgcc ttgagtgctt caagtagtgt gtgcccgtct gttgtgtgac 5941 tctggtaact agagatccct cagacccttt tagtcagtgt ggaaaatctc tagcagtagt 6001 agttcatgtc atcttattat tcagtattta taacttgcaa agaaatgaat atcagagagt 6061 gagaggaact tgtttattgc agcttataat ggttacaaat aaagcaatag catcacaaat 6121 ttcacaaata aagcattttt ttcactgcat tctagttgtg gtttgtccaa actcatcaat 6181 gtatcttatc atgtctggct ctagctatcc cgcccctaac tccgcccagt tccgcccatt 6241 ctccgcccca tggctgacta atttttttta tttatgcaga ggccgaggcc gcctcggcct 6301 ctgagctatt ccagaagtag tgaggaggct tttttggagg cctagacttt tgcagagacg 6361 gcccaaattc gtaatcatgg tcatagctgt ttcctgtgtg aaattgttat ccgctcacaa 6421 ttccacacaa catacgagcc ggaagcataa agtgtaaagc ctggggtgcc taatgagtga 6481 gctaactcac attaattgcg ttgcgctcac tgcccgcttt ccagtcggga aacctgtcgt 6541 gccagctgca ttaatgaatc ggccaacgcg cggggagagg cggtttgcgt attgggcgct 6601 cttccgcttc ctcgctcact gactcgctgc gctcggtcgt tcggctgcgg cgagcggtat 6661 cagctcactc aaaggcggta atacggttat ccacagaatc aggggataac gcaggaaaga 6721 acatgtgagc aaaaggccag caaaaggcca ggaaccgtaa aaaggccgcg ttgctggcgt 6781 ttttccatag gctccgcccc cctgacgagc atcacaaaaa tcgacgctca agtcagaggt 6841 ggcgaaaccc gacaggacta taaagatacc aggcgtttcc ccctggaagc tccctcgtgc 6901 gctctcctgt tccgaccctg ccgcttaccg gatacctgtc cgcctttctc ccttcgggaa 6961 gcgtggcgct ttctcatagc tcacgctgta ggtatctcag ttcggtgtag gtcgttcgct 7021 ccaagctggg ctgtgtgcac gaaccccccg ttcagcccga ccgctgcgcc ttatccggta 7081 actatcgtct tgagtccaac ccggtaagac acgacttatc gccactggca gcagccactg 7141 gtaacaggat tagcagagcg aggtatgtag gcggtgctac agagttcttg aagtggtggc 7201 ctaactacgg ctacactaga aggacagtat ttggtatctg cgctctgctg aagccagtta 7261 ccttcggaaa aagagttggt agctcttgat ccggcaaaca aaccaccgct ggtagcggtg 7321 gtttttttgt ttgcaagcag cagattacgc gcagaaaaaa aggatctcaa gaagatcctt 7381 tgatcttttc tacggggtct gacgctcagt ggaacgaaaa ctcacgttaa gggattttgg 7441 tcatgagatt atcaaaaagg atcttcacct agatcctttt aaattaaaaa tgaagtttta 7501 aatcaatcta aagtatatat gagtaaactt ggtctgacag ttaccaatgc ttaatcagtg 7561 aggcacctat ctcagcgatc tgtctatttc gttcatccat agttgcctga ctccccgtcg 7621 tgtagataac tacgatacgg gagggcttac catctggccc cagtgctgca atgataccgc 7681 gagacccacg ctcaccggct ccagatttat cagcaataaa ccagccagcc ggaagggccg 7741 agcgcagaag tggtcctgca actttatccg cctccatcca gtctattaat tgttgccggg 7801 aagctagagt aagtagttcg ccagttaata gtttgcgcaa cgttgttgcc attgctacag 7861 gcatcgtggt gtcacgctcg tcgtttggta tggcttcatt cagctccggt tcccaacgat 7921 caaggcgagt tacatgatcc cccatgttgt gcaaaaaagc ggttagctcc ttcggtcctc 7981 cgatcgttgt cagaagtaag ttggccgcag tgttatcact catggttatg gcagcactgc 8041 ataattctct tactgtcatg ccatccgtaa gatgcttttc tgtgactggt gagtactcaa 8101 ccaagtcatt ctgagaatag tgtatgcggc gaccgagttg ctcttgcccg gcgtcaatac 8161 gggataatac cgcgccacat agcagaactt taaaagtgct catcattgga aaacgttctt 8221 cggggcgaaa actctcaagg atcttaccgc tgttgagatc cagttcgatg taacccactc 8281 gtgcacccaa ctgatcttca gcatctttta ctttcaccag cgtttctggg tgagcaaaaa 8341 caggaaggca aaatgccgca aaaaagggaa taagggcgac acggaaatgt tgaatactca 8401 tactcttcct ttttcaatat tattgaagca tttatcaggg ttattgtctc atgagcggat 8461 acatatttga atgtatttag aaaaataaac aaataggggt tccgcgcaca tttccccgaa 8521 aagtgccacc tgacgtctaa gaaaccatta ttatcatgac attaacctat aaaaataggc 8581 gtatcacgag gccctttcgt ctcgcgcgtt tcggtgatga cggtgaaaac ctctgacaca 8641 tgcagctccc ggagacggtc acagcttgtc tgtaagcgga tgccgggagc agacaagccc 8701 gtcagggcgc gtcagcgggt gttggcgggt gtcggggctg gcttaactat gcggcatcag 8761 agcagattgt actgagagtg caccatatgc ggtgtgaaat accgcacaga tgcgtaagga 8821 gaaaataccg catcaggcgc cattcgccat tcaggctgcg caactgttgg gaagggcgat 8881 cggtgcgggc ctcttcgcta ttacgccagc tggcgaaagg gggatgtgct gcaaggcgat 8941 taagttgggt aacgccaggg ttttcccagt cacgacgttg taaaacgacg gccagtgcca 9001 agctg //